Difference between revisions of "Taxon lists for DiversityMobile"

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*The IBF project/ DiversityMobile (smartphone app, app for Tablet PCs), the [http://www.bolgermany.de German Barcode of Life] (=GBOL) project as well as many other biodiversity research projects depend on '''national/ regional species checklists/ taxon reference lists'''.
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see
  
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*Species checklists/ taxon reference lists are essential as underlying standard lists (backbones) for web presentation services and (search) interfaces (e. g. as scroll lists). They are needed as dynamic service (database views and exports, web services) and as non-dynamic exports in various schemas and formats for external local database applications.
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* [[DTN taxon lists concept and architecture]]
  
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*Such lists as managed by [http://www.diversityworkbench.net/Portal/DiversityTaxonNames DiversityTaxonNames] '''(=DTN) databases''' in a Diversity Workbench '''(= DWB) environment''' are called '''DTN taxon lists'''.
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* [http://www.diversitymobile.net/wiki/DTN_Taxon_Lists_Services Taxon lists services for GBOL]
  
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*'''DTN taxon lists''' might be created (a) by direct import of taxon names from tab separated list files in a DWB environment, (b) by adding the relevant list information to nomenclators and species/ taxon  databases already available as '''project''' in a '''DTN database''' of any DWB environment (e. g. GBIFnomenmyx, LIASnames, MELnames, MSWnames in the DWB environment of the SNSB, and UBTgallnames in the open TNT environment) and in future (c) by using the freely available (global) name thesauri e. g. via SOAP web services of Catalogue of Life (CoL), of Species File  Software (SFS), IndexFungorum etc. to create a new DTN taxon list in a DTN database - ''[functionality "c" not yet implemented in DTN client!]''.
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* [[Taxon lists services for DiversityMobile]]
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*The existing '''DTN taxon lists''' in the context of IBF, LIAS and GBOL are built by either the method (a) or (b). They rely on expert taxonomists (= '''list curators''') who collect information from published resources as national checklists and taxonomic thesauri as the "Global Species Databases" from the Catalogue of Life initiative ([http://www.catalogueoflife.org/info/databases GSDs]).
 
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*The content of  '''DTN taxon lists''' has to be continuously updated. The '''list curators''' will be responsible for managing that data preferably by using the DTN .Net clients on their desktops.
 
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*Additions and corrections are welcome and might be sent to the respective '''list curators''' or to the persons responsible for the common taxonomy of major initiatives or projects like LIAS and GBOL.
 
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*To document the content of the lists currently used in the IBF, LIAS and GBOL context and enlarge the acceptance within the project communities they will be accessible for open and free download as csv, xls, xml files via the [http://www.bolgermany.de GBOL portal], the [http://www.gbif.de/gbif-de GBIF-D portal] and the [http://www.diversitymobile.net DiversityMobile Wiki].
 
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*The '''DTN taxon lists''' do not compete against commented reference checklists/ red lists etc., published e. g. by the Bundesamt für Naturschutz as regular citable and copyrighted publications. They are non-commented outputs of a relational database system.
 
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==DTN databases in the DWB virtual server environment "TNT"==
 
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There are '''DTN databases''' for each major organism group in the DWB virtual server environment "Taxon Names and Terms (=TNT)". Each database has '''name projects''' with '''DTN taxon lists'''. Expert taxonomists and '''list curators''' will have access on project level to edit names data. The '''DTN taxon lists''' are accessible for web applications, e. g. through the DWB web editor for GBOL.
 
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'''DiversityTaxonNames_Animalia'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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'''DiversityTaxonNames_Insecta'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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''Project: IBFnames'' with  '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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'''DiversityTaxonNames_Vertebrata'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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'''DiversityTaxonNames_Fungi'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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''Project: LIASnames'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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'''DiversityTaxonNames_Myxomycetes'''
 
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''Project: GBIFnomenmyx'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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'''DiversityTaxonNames_Plants'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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'''DiversityTaxonNames_Galls'''
 
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''Project: UBTgallnames'' with '''DTN taxon lists''' (=TaxRefLists): see table below.
 
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== DTN taxon lists  legend ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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|- style="background:#FF0000;"
 
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|Taxon list missing
 
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|- style="background:#FFA500;"
 
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|Taxon list exist but import confirmation missing
 
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|- style="background:#FFFF00;"
 
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| imported, ready for checking
 
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|- style="background:#00FF00;"
 
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| ready to use
 
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|}
 
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== DTN taxon lists  - Animalia varia ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
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! Curators
 
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! Release date
 
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! Downloads (csv, xls, xml)
 
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|- style="background:#FF0000;"
 
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| Arachnida ["Rest", exkl. Araneae, Pseudoscorpiones] || Germany ||  || TaxRef_GBOL_Arachnida_DE || ||  ||
 
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|- style="background:#FFA500;"
 
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| Pseudoscorpiones || Germany ||  || TaxRef_GBOL_Pseudoscorpiones_DE || Björn Rulik ||  ||
 
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|- style="background:#FF0000;"
 
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| Araneae || Germany ||  || TaxRef_GBOL_Araneae_DE || Dr. Hubert Höfer ||  ||
 
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|- style="background:#FFA500;"
 
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| Chilopoda || Germany ||  || TaxRef_GBOL_Chilopoda_DE || Dr. Thomas Wesener ||  ||
 
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|- style="background:#FFA500;"
 
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| Diplopoda || Germany ||  || TaxRef_GBOL_Diplopoda_DE || Dr. Thomas Wesener ||  ||
 
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|- style="background:#FF0000;"
 
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| Symphyla || Germany ||  || TaxRef_GBOL_Symphyla_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Pauropoda || Germany ||  || TaxRef_GBOL_Pauropoda_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Malacostraca || Germany ||  || TaxRef_GBOL_Malacostraca_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Eumalacostraca || Germany ||  || TaxRef_GBOL_Eumalacostraca_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Heterotardigrada || Germany ||  || TaxRef_GBOL_Heterotardigrada_DE ||  ||  ||
 
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|-
 
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|-|- style="background:#F5F5F5;"
 
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|-
 
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|}
 
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== DTN taxon lists - Insecta ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
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! Curators
 
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! Release date
 
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! Downloads (csv, xls, xml)
 
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|-style="background:#FFFF00;"
 
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| Orthoptera (Grashoppers) || Germany || 88 || TaxRef_SNSB_Orthoptera_DE || Dr. Sigfrid Ingrisch, Harald Schott ||  ||
 
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|- style="background:#FF0000;"
 
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| Collembola || Germany ||  || TaxRef_GBOL_Collembola_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Neuroptera || Germany ||  || TaxRef_GBOL_Neuroptera_DE ||  ||  ||
 
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|- style="background:#FFFF00;"
 
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| Coleoptera || Germany ||  || TaxRef_GBOL_Coleoptera_DE ||Dr. Dirk Ahrens||  ||
 
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|- style="background:#FF0000;"
 
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| Diptera || Germany ||  || TaxRef_GBOL_Diptera_DE ||Björn Rulik||  ||
 
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|- style="background:#FF0000;"
 
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| Ephemeroptera || Germany ||  || TaxRef_GBOL_Ephemeroptera_DE ||  ||  ||
 
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|- style="background:#00FF00;"
 
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| Auchenorrhyncha|| Germany ||  || TaxRef_GBOL_Auchenorrhyncha_DE ||Björn Rulik||  ||
 
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|-style="background:#FFA500;"
 
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| Heteroptera|| Germany ||  || TaxRef_GBOL_Heteroptera_DE ||Dr. Carsten Morkel||  ||
 
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|- style="background:#FF0000;"
 
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| Mecoptera || Germany ||  || TaxRef_GBOL_Mecoptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Phthiraptera|| Germany ||  || TaxRef_GBOL_Phthiraptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Psocoptera || Germany ||  || TaxRef_GBOL_Psocoptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Raphidioptera || Germany ||  || TaxRef_GBOL_Raphidioptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Saltatoria || Germany ||  || TaxRef_GBOL_Saltatoria_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Siphonaptera || Germany ||  || TaxRef_GBOL_Siphonaptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Strepsiptera || Germany ||  || TaxRef_GBOL_Strepsiptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Thysanoptera || Germany ||  || TaxRef_GBOL_Thysanoptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Trichoptera || Germany ||  || TaxRef_GBOL_Trichoptera_DE ||  ||  ||
 
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|- style="background:#FF0000;"
 
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| Zoraptera || Germany ||  || TaxRef_GBOL_Zoraptera_DE ||  ||  ||
 
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|- style="background:#F5F5F5;"
 
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|- style="background:#F5F5F5;"
 
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|}
 
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== DTN taxon lists - Vertebrata==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
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! Curators
 
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! Release date
 
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! Downloads (csv, xls, xml)
 
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|- style="background:#FFFF00;"
 
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| Amphibia || Germany ||  || TaxRef_GBOL_Amphibia_DE || Dr. Dennis Rödder ||  ||
 
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|- style="background:#FFFF00;"
 
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| Reptilia || Germany ||  || TaxRef_GBOL_Reptilia_DE || Dr. Dennis Rödder ||  ||
 
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|- style="background:#FF0000;"
 
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| Aves || Germany ||  || TaxRef_GBOL_Aves_DE ||Dr. Renate van den Elzen||  ||
 
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|- style="background:#FFFF00;"
 
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| Mammalia || Germany ||  || TaxRef_GBOL_Mammalia_DE ||Dr. Rainer Hutterer||  ||
 
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|- style="background:#FFA500 ;"
 
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|Pisces et Cyclostomata || Germany ||  || TaxRef_GBOL_Pisces_DE || Dr. Matthias Geiger ||  ||
 
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|- style="background:#F5F5F5;"
 
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|- style="background:#F5F5F5;"
 
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|}
 
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== DTN taxon lists - Fungi and Lichens ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
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! Curators
 
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! Release date
 
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! Downloads (csv, xls, xml)
 
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|-
 
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| Powdery mildews || Germany ||  || TaxRef_LIAS_Erys_DE  || K. Bensch || ||
 
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|- style="background:#F5F5F5;"
 
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| Lichens || Germany ||  || TaxRef_LIAS_Lichens_DE
 
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|| W. von Brackel, ? P. Scholz, D. Triebel || ||
 
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|-
 
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| Lichen-associated fungi || Germany ||  || TaxRef_LIAS_LichFungi_DE
 
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|| W. von Brackel, D. Triebel || ||
 
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|- style="background:#F5F5F5;"
 
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| Lichens || United Kingdom ||  || TaxRef_LIAS_Lichens_UK || D. Triebel|| ||
 
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|-
 
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| Lichen-associated fungi|| United Kingdom ||  || TaxRef_LIAS_LichFungi_UK || D. Triebel|| ||
 
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|- style="background:#F5F5F5;"
 
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| Ascomycetes - higher classification || - ||  || TaxRef_LIAS_Myconet || T. H. Lumbsch, D. Triebel|| ||
 
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|-
 
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|- style="background:#F5F5F5;"
 
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|}
 
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== DTN taxon lists - Myxomycetes ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
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! Curators
 
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! Release date
 
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! Downloads (csv, xls, xml)
 
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|-
 
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| Slime moulds || Germany || 380 || TaxRef_SNSB_Myxomycetes_DE || ? A. Kuhnt, ? M. Schnittler ||  ||
 
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|- style="background:#F5F5F5;"
 
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|- style="background:#F5F5F5;"
 
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|}
 
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== DTN taxon lists - Plants ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
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! Curators
 
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! Release date
 
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! Downloads (csv, xls, xml)
 
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|- style="background:#FF0000;"
 
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| Vascular plants || Germany ||  || TaxRef_BfN_VPlants || W. Ahlmer, S. Klotz||  || 
 
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|- style="background:#FFFF00;"
 
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| Pteridophytes (= horsetails, ferns, club mosses, quillworts) || Germany ||  || TaxRef_GBOL_Pteridophyta_DE || ? J. Heinrichs, ? M. Nebel ||  ||
 
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|- style="background:#FFFF00;"
 
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| Liverworts || Germany || 291 || TaxRef_GBOL_Liverworts_DE || ? J. Heinrichs, ? M. Nebel ||  ||
 
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|- style="background:#FFFF00;"
 
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| Hornworts || Germany ||  || TaxRef_GBOL_Hornworts_DE || ? J. Heinrichs, ? M. Nebel ||  ||
 
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|-
 
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|- style="background:#F5F5F5;"
 
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|}
 
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== DTN taxon lists - Plant galls ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
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! Curators
 
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! Release date
 
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! Downloads (csv, xls, xml)
 
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|- style="background:#FF0000;"
 
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| Plant gall inducing organisms || Germany || c. ? || TaxRef_UBT_Galls_DE || G. Rambold, A. Guhr ||  ||
 
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|- style="background:#F5F5F5;"
 
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|- style="background:#F5F5F5;"
 
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|   ||   ||   ||   ||   ||   ||  
 
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|}
 
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==DiversityMobile database in the DWB virtual server environment "TNT"==
 
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The database '''DiversityMobile''' with its current installations in the SNSB and TNT environments is designed for DiversityMobile applications on smartphones. It gives open and free read only access to all '''DTN taxon lists''' (=TaxRefLists) available in the TNT environment.
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
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! List
 
−
! Curators
 
−
! Release date
 
−
! Downloads (csv, xls, xml)
 
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|-style="background:#FFFF00;"
 
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| Orthoptera (Grashoppers) || Germany || 88 || TaxRef_SNSB_Orthoptera_DE || Dr. Sigfrid Ingrisch, Harald Schott ||  ||
 
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|- style="background:#00FF00;"
 
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| Auchenorrhyncha|| Germany ||  || TaxRef_GBOL_Auchenorrhyncha_DE ||Björn Rulik||  ||
 
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|- style="background:#F5F5F5;"
 
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|- style="background:#F5F5F5;"
 
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|   ||   ||   ||   ||   ||   ||  
 
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|}
 
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==DiversityMobile database in the DWB virtual server environment "SNSB"==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms
 
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! Region
 
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! Taxa
 
−
! List
 
−
! Curators
 
−
! Release date
 
−
! Downloads (csv, xls, xml)
 
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|- style="background:#00FF00;"
 
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| Powdery mildews || Germany ||  || TaxRef_LIAS_Erys_DE  || K. Bensch || ||
 
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|- style="background:#00FF00;"
 
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| Lichens || Germany ||  || TaxRef_LIAS_Lichens_DE
 
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|| W. von Brackel, ? P. Scholz, D. Triebel || ||
 
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|- style="background:#00FF00;"
 
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| Lichen-associated fungi || Germany ||  || TaxRef_LIAS_LichFungi_DE
 
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|| W. von Brackel, D. Triebel || ||
 
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|- style="background:#FF0000;"
 
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| Vascular plants || Germany ||  || TaxRef_BfN_VPlants || W. Ahlmer, S. Klotz||  ||
 
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|- style="background:#FF0000;"
 
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| || Germany ||  || TaxRef_UBT_Herbivores || ||  || 
 
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|- style="background:#FF0000;"
 
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| Fungi|| Germany ||  || TaxRef_DGfM_Fungi || ||  || 
 
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|- style="background:#F5F5F5;"
 
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|- style="background:#F5F5F5;"
 
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|}
 
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== Additions ==
 
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*Further name projects and taxon lists designed for specific research projects and institutional collection purposes are stored in the DWB environments e.g. of SMNK, SNSB, UBT, ZFMK.
 
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*There are some DTNtaxonlists with restricted access rights for DiversityMobile applications. They are stored in the DiversityMobile installation of the SNSB.
 
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-----
 
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''Notes und Infos (später zu löschen):''
 
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German Barcode of Life (GBOL) information:
 
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https://www.bolgermany.de/team/projekte
 
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https://www.bolgermany.de/gbol/organismengruppen
 
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https://www.bolgermany.de/gbol/organismengruppen/landpflanzen-pilze
 
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GBOL Taxonkoordinator: Björn Rulik (b.rulik@zfmk.de)
 
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Barcoding Fauna Bavarica (BFB) information:
 
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http://www.faunabavarica.de/taxa1-1
 
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Ref. Myxomyxetes Deutschland:
 
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Schnittler, M., Kummer, V., Kuhnt, A., Krieglsteiner, L., Flatau, L., Müller, H. & Täglich, U. 2011 Rote Liste und Gesamtartenliste der Schleimpilze (Myxomycetes) Deutschlands. Naturschutz und Biologische Vielfalt 70 (6): 125-234.
 
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p. 138 GBIF-D erwähnt
 
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und http://www.gbif-mycology.de/DatabaseClients/GBIFmyxchecklist/
 
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−
siehe http://www.diversitymobile.net/wiki/DiversityTaxonNames_Artenlisten
 

Latest revision as of 18:31, 24 March 2013

see

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