Difference between revisions of "Taxon lists for DiversityMobile"

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*The IBF project/ DiversityMobile (smartphone app, app for Tablet PCs), the [http://www.bolgermany.de German Barcode of Life] (=GBOL) project as well as other biodiversity research projects depend on '''national/ regional species checklists/ taxon reference lists'''. Such lists can be managed by [http://www.diversityworkbench.net/Portal/DiversityTaxonNames DiversityTaxonNames] '''(=DTN) databases''' in a Diversity Workbench (= DWB) environment.
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see
  
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*Species checklists/ taxon reference lists are essential as underlying standard lists (backbones) for presentation services and (search) interfaces (e. g. as scroll lists). They are needed as dynamic service (database views and exports, web services) and as non-dynamic exports in various schemas and formats for external local database applications.
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* [[DTN taxon lists concept and architecture]]
  
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*'''DTN taxon lists''' might be created (a) by direct import from tab separated list files in the DWB environment, (b) by using the freely available (global) name thesauri e. g. via web services of Catalogue of Life (CoL) and IndexFungorum to create a taxon list in DTN or, (c) by adding the relevant list information to the global nomenclators and species databases already available as '''project''' in a '''DTN database''' of any DWB environment (e.g. GBIFnomenmyx, LIASnames, MELnames, MSWnames in the DWB environment of the SNSB, and UBTgallnames in the open TNT environment).
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* [http://www.diversitymobile.net/wiki/DTN_Taxon_Lists_Services Taxon lists services for GBOL]
  
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*The existing '''DTN taxon lists''' in the context of IBF and GBOL are built by either the method (a) or (c). They rely on expert taxonomists (='''list curators''') who collect information from published resources as national checklists and taxonomic thesauri as the "Global Species Databases" from the Catalogue of Life initiative ([http://www.catalogueoflife.org/info/databases GSDs]).
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* [[Taxon lists services for DiversityMobile]]
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*The content of the '''DTN taxon lists''' will be continuously updated. The '''list curators''' will be responsible for managing that data preferably by using the DTN .Net clients on their desktops.
 
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*Additions and corrections are welcome and might be sent to the '''list curators''' or to the persons responsible for the common taxonomy of major projects like GBOL.
 
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*To document the content of the lists currently used in the IBF and GBOL context and enlarge the acceptance within the project communities they will be accessible for open and free download as csv, xls, xml files via the [http://www.bolgermany.de GBOL portal], the [http://www.gbif.de/gbif-de GBIF-D portal] and the [http://www.diversitymobile.net DiversityMobile Wiki].
 
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*The '''DTN taxon lists''' do not compete against commented reference checklists/ red lists etc., published e. g. by the Bundesamt für Naturschutz as regular citable and copyrighted publications. They are non-commented outputs of a relational database system.
 
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== Animalia varia - DTN taxon lists ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms covered
 
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! Country/ region covered
 
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! DTN List number of taxa
 
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! DTN List Resource name
 
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! DTN List curators
 
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! DTN List release date
 
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! Downloads (csv, xls, xml)
 
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| Arachnida ["Rest", exkl. Araneae, Pseudoscorpiones] || Germany || ? || TaxRef_GBOL_Arachnida_DE || || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Pseudoscorpiones || Germany || ? || '''TaxRef_GBOL_Pseudoscorpiones_DE''' || Björn Rulik || 3 || 3
 
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|-
 
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| Araneae || Germany || ? || TaxRef_GBOL_Araneae_DE || Dr. Hubert Höfer || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Chilopoda || Germany || ? || '''TaxRef_GBOL_Chilopoda_DE''' || Dr. Thomas Wesener || 3 || 3
 
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| Diplopoda || Germany || ? || '''TaxRef_GBOL_Diplopoda_DE''' || Dr. Thomas Wesener || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Symphyla || Germany || ? || TaxRef_GBOL_Symphyla_DE || ? || 3 || 3
 
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| Pauropoda || Germany || ? || TaxRef_GBOL_Pauropoda_DE || ? || 3 || 3
 
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| Malacostraca || Germany || ? || TaxRef_GBOL_Malacostraca_DE || ? || 3 || 3
 
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| Eumalacostraca || Germany || ? || TaxRef_GBOL_Eumalacostraca_DE || ? || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Heterotardigrada || Germany || ? || TaxRef_GBOL_Heterotardigrada_DE || ? || 3 || 3
 
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== Insecta - DTN taxon lists ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms covered
 
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! Country/ region covered
 
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! DTN List number of taxa
 
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! DTN List Resource name
 
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! DTN List curators
 
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! DTN List release date
 
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! Downloads (csv, xls, xml)
 
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|-style="background:#F5F5F5;"
 
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| Orthoptera (Grashoppers) || Germany || 88 || '''TaxRef_SNSB_Orthoptera_DE''' || S. Ingrisch, H. Schott || 3 || 3
 
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| Collembola || Germany || ? || TaxRef_GBOL_Collembola_DE || ? || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Neuroptera || Germany ||  ? || TaxRef_GBOL_Neuroptera_DE || ? || 3 || 3
 
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| Coleoptera || Germany || ? || '''TaxRef_GBOL_Coleoptera_DE''' ||Dr. Dirk Ahrens|| 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Diptera || Germany || ? || TaxRef_GBOL_Diptera_DE ||Björn Rulik|| 3 || 3
 
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| Ephemeroptera || Germany ||  ? || TaxRef_GBOL_Ephemeroptera_DE || ? || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Auchenorrhyncha|| Germany || ? || TaxRef_GBOL_Auchenorrhyncha_DE ||Björn Rulik|| 3 || 3
 
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| Heteroptera|| Germany || ? || '''TaxRef_GBOL_Heteroptera_DE''' ||Dr. Carsten Morkel|| 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Mecoptera || Germany ||  ? || TaxRef_GBOL_Mecoptera_DE || ? || 3 || 3
 
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| Phthiraptera|| Germany || ? || TaxRef_GBOL_Phthiraptera_DE || ? || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Psocoptera || Germany || ? || TaxRef_GBOL_Psocoptera_DE || ? || 3 || 3
 
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| Raphidioptera || Germany ||  ? || TaxRef_GBOL_Raphidioptera_DE || ? || 3 || 3
 
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| Saltatoria || Germany || ? || TaxRef_GBOL_Saltatoria_DE || ? || 3 || 3
 
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| Siphonaptera || Germany || ? || TaxRef_GBOL_Siphonaptera_DE || ? || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Strepsiptera || Germany ||  ? || TaxRef_GBOL_Strepsiptera_DE || ? || 3 || 3
 
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| Thysanoptera || Germany || ? || TaxRef_GBOL_Thysanoptera_DE || ? || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Trichoptera || Germany || ? || TaxRef_GBOL_Trichoptera_DE || ? || 3 || 3
 
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| Zoraptera || Germany || ? || TaxRef_GBOL_Zoraptera_DE || ? || 3 || 3
 
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== Vertebrata - DTN taxon lists ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms covered
 
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! Country/ region covered
 
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! DTN List number of taxa
 
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! DTN List Resource name
 
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! DTN List curators
 
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! DTN List release date
 
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! Downloads (csv, xls, xml)
 
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| Amphibia || Germany || ? || TaxRef_GBOL_Amphibia_DE || Dr. Dennis Rödder || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Reptilia || Germany || ? || TaxRef_GBOL_Reptilia_DE || Dr. Dennis Rödder || 3 || 3
 
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| Aves || Germany || ? || TaxRef_GBOL_Aves_DE ||Dr. Renate van den Elzen|| 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Mammalia || Germany || ? || TaxRef_GBOL_Mammalia_DE ||Dr. Rainer Hutterer|| 3 || 3
 
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|"Pisces et Cyclostomata" || Germany || ? || '''TaxRef_GBOL_Pisces_DE''' || Dr. Matthias Geiger || 3 || 3
 
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== Fungi and Lichens - DTN taxon lists ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms covered
 
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! Country/ region covered
 
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! DTN List number of taxa
 
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! DTN List resource name
 
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! DTN List curators
 
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! DTN List release date
 
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! Downloads (csv, xls, xml)
 
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| Powdery mildews || Germany || ? || TaxRef_LIAS_Erys_DE  || K. Bensch || 3|| 3
 
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|- style="background:#F5F5F5;"
 
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| Lichens || Germany || ? || TaxRef_LIAS_Lichens_DE
 
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|| W. von Brackel, ? P. Scholz, D. Triebel || 3|| 3
 
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| Lichen-associated fungi || Germany || ? || TaxRef_LIAS_LichFungi_DE
 
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|| W. von Brackel, D. Triebel || 3|| 3
 
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|- style="background:#F5F5F5;"
 
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| Lichens || United Kingdom || ? || TaxRef_LIAS_Lichens_UK || D. Triebel|| 3|| 3
 
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| Lichen-associated fungi|| United Kingdom || ? || TaxRef_LIAS_LichFungi_UK || D. Triebel|| 3|| 3
 
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|- style="background:#F5F5F5;"
 
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| Ascomycetes - higher classification || - || ? || TaxRef_LIAS_Myconet || T. H. Lumbsch, D. Triebel|| 3|| 3
 
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== Myxomycetes - DTN taxon lists ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms covered
 
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! Country/ region covered
 
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! DTN List number of taxa
 
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! DTN List Resource name
 
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! DTN List curators
 
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! DTN List release date
 
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! Downloads (csv, xls, xml)
 
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|-
 
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| Slime moulds || Germany || 380 || TaxRef_SNSB_Myxomycetes_DE || ? A. Kuhnt, ? M. Schnittler || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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== Plants - DTN taxon lists ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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|-style="text-align:left; background:#D3D3D3;"
 
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! Organisms covered
 
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! Country/ region covered
 
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! DTN List number of taxa
 
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! DTN List Resource name
 
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! DTN List curators
 
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! DTN List release date
 
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! Downloads (csv, xls, xml)
 
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| Vascular plants || Germany || ? || TaxRef_BfN_VPlants || W. Ahlmer, S. Klotz|| 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Pteridophytes (= horsetails, ferns, club mosses, quillworts) || Germany || ? || '''TaxRef_GBOL_Pteridophyta_DE''' || ? J. Heinrichs, ? M. Nebel || 3 || 3
 
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| Liverworts || Germany || 291 || '''TaxRef_GBOL_Liverworts_DE''' || ? J. Heinrichs, ? M. Nebel || 3 || 3
 
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|- style="background:#F5F5F5;"
 
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| Hornworts || Germany || ? || '''TaxRef_GBOL_Hornworts_DE''' || ? J. Heinrichs, ? M. Nebel || 3 || 3
 
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== Plant galls - DTN taxon lists ==
 
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{|border=1 cellpadding="5" style="margin:1em 1em 1em 0; background:#FFFFFF;border:1px #AAA solid; border-collapse:collapse; empty-cells:show;"
 
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! Organisms covered
 
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! Country/ region covered
 
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! DTN List number of taxa
 
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! DTN List Resource name
 
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! DTN List curators
 
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! DTN List release date
 
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! Downloads (csv, xls, xml)
 
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| Plant gall inducing organisms || Germany || c. ? || TaxRef_UBT_Galls_DE || G. Rambold, A. Guhr || 3 || 3
 
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==DTN databases in the DWB virtual server environment "TNT"==
 
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There are '''DTN databases''' (with '''name projects''' and '''DTN taxon lists''') for each major organism group in the DWB virtual server environment "TNT". The '''DTN taxon lists''' are accessible for web applications, e. g. through the DWB web editor for GBOL. '''list curators''' will have access to edit names data.
 
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'''DiversityTaxonNames_Animalia'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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'''DiversityTaxonNames_Insecta'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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''Project: IBFnames'' with  '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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'''DiversityTaxonNames_Vertebrata'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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'''DiversityTaxonNames_Fungi'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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''Project: LIASnames'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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'''DiversityTaxonNames_Myxomycetes'''
 
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''Project: GBIFnomenmyx'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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'''DiversityTaxonNames_Plants'''
 
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''Project: GBOLnames'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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'''DiversityTaxonNames_Galls'''
 
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''Project: UBTgallnames'' with '''DTN taxon lists''' (=TaxRefLists): see table above.
 
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==DiversityMobile database in the DWB virtual server environment "TNT"==
 
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The database '''DiversityMobile_TNT''' is designed for access by the DiversityMobile applications for smartphones. It gives open and free read only access to all '''DTN taxon lists''' (=TaxRefLists) available in the TNT environment.
 
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''Notes und Infos (später zu löschen):''
 
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German Barcode of Life (GBOL) information:
 
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https://www.bolgermany.de/team/projekte
 
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https://www.bolgermany.de/gbol/organismengruppen
 
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https://www.bolgermany.de/gbol/organismengruppen/landpflanzen-pilze
 
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GBOL Taxonkoordinator: Björn Rulik (b.rulik@zfmk.de)
 
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Barcoding Fauna Bavarica (BFB) information:
 
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http://www.faunabavarica.de/taxa1-1
 
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Ref. Myxomyxetes Deutschland:
 
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Schnittler, M., Kummer, V., Kuhnt, A., Krieglsteiner, L., Flatau, L., Müller, H. & Täglich, U. 2011 Rote Liste und Gesamtartenliste der Schleimpilze (Myxomycetes) Deutschlands. Naturschutz und Biologische Vielfalt 70 (6): 125-234.
 
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p. 138 GBIF-D erwähnt
 
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und http://www.gbif-mycology.de/DatabaseClients/GBIFmyxchecklist/
 
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siehe http://www.diversitymobile.net/wiki/DiversityTaxonNames_Artenlisten
 

Latest revision as of 18:31, 24 March 2013

see

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