Difference between revisions of "DTN Taxon Lists Services"

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Revision as of 15:09, 29 July 2015

The IBF project/ DiversityMobile (smartphone app, app for Tablet PCs), the German Barcode of Life (=GBOL) project as well as many other biodiversity research projects depend on national/ regional species checklists/ taxon reference lists. Starting with early 2012 we developed a concept to offer open and freely accessible services with a dynamic data flow involving DTN data bases DTN Software and DTN Information model. The concept was first presented in September 2012 on a Diversity Workbench Workshop devoted to this theme. It is explained in detail under DTN taxon lists concept and architecture. Relevant meta data are managed by TNT server installations of DiversityAgents and DiversityProjects (including Agents IDs and Projects IDs).

Since 2014 – as part of the German Federation for Biological Data (=GFBio) project – the services on the "Taxon-names-and-terms-(TNT)" server are extended by the SMNS, SNSB and ZFMK concerning IT and content. A REST API called "DWB REST Webservice for Taxon Lists", shortly "DTNtaxonlists", is going to be developped (Starting page and documentation – prototype). The services will be registered in the BiodiversityCatalogue and accessed by the GFBio Terminology Server.

This page is for a first organising of the meta data from the available taxon lists.

In 2015 the following organisations and projects are active in supporting curation activities:

Institutions:

Projects:

  • DiversityMobile (IBF/ DiversityMobile) – coordination: Tanja Weibulat (SNSB)
  • German Barcode of Life (GBOL) – coordination of taxon list mobilisation and curation: Björn Rulik (ZFMK), Jérôme Morinière and Jörg Spelda (SNSB–ZSM)

Biological Societies:


Some of the checklists might be appropriate to be published as text and data files, e. g. through Biodiversity Data Journal. The list curators will be the authors of such publications. Infos under http://biodiversitydatajournal.com./about#Globallyuniqueinnovations.


DTN taxon lists legend

Taxon list missing
Taxon list under curatorial optimisation for import
ready for import
ready for replication to TNT server
imported, ready for checking
ready to use

DTN taxon lists - Animalia (excluding insects and vertebrates)

List title List code Taxonomic or biotic group Region Taxon names below genus level (number) Synonyms (number); Higher classification above subgenus/ genus level (+/-) Vernacular names - DE (number) List curator(s) Organisation(s) and /or project(s) supporting curation activities Publications
Taxon list of Acoelomorpha from Germany compiled in the context of the GBOL project TaxRef_GBOL_Acoelomorpha_DE Acoelomorpha Germany SNSB–ZSM; GBOL
Taxon list of Annelida from Germany compiled in the context of the GBOL project TaxRef_GBOL_Annelida_DE Annelida s.l. Germany 293 - ; + 1 SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Arachnida from Germany compiled in the context of the GBOL project TaxRef_GBOL_Arachnida_DE Arachnida ["Rest", exkl. Araneae, Oribatida, Pseudoscorpiones, Opiliones] Germany SMNK, SMNS, ZFMK; GBOL
About "Taxon list of Araneae from Germany compiled in the context of the GBOL project" TaxRef_GBOL_Araneae_DE (701) Araneae Germany 1.100 36 ; + - Dr. Hubert Höfer SMNK; GBOL
Taxon list of Bryozoa from Germany compiled in the context of the GBOL project TaxRef_GBOL_Bryozoa_DE Bryozoa Germany 16 - ; + 1 SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Chilopoda from Germany compiled in the context of the GBOL project TaxRef_GBOL_Chilopoda_DE Chilopoda Germany 61 - ; + 1 Dr. Jörg Spelda, Dr. Thomas Wesener ZFMK, SNSB–ZSM; GBOL Voigtländer et al. (2011)
Taxon list of Cnidaria from Germany compiled in the context of the GBOL project TaxRef_GBOL_Cnidaria_DE Cnidaria Germany 31 - ; + - SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Crustacea from Germany compiled in the context of the GBOL project TaxRef_GBOL_Crustacea_DE Crustacea Germany 458 - ; + 2 ZFMK; GBOL Boxshall (2013)
About "Taxon list of Diplopoda from Germany compiled in the context of the GBOL Project" TaxRef_GBOL_Diplopoda_DE (704) Diplopoda Germany 135 - ; + 1 Dr. Jörg Spelda, Dr. Thomas Wesener ZFMK, SNSB–ZSM; GBOL Voigtländer et al. (2011)
Taxon list of Mollusca from Germany compiled in the context of the GBOL project TaxRef_GBOL_Mollusca_DE Mollusca Germany 475 - ; + - Katrin Koller SNSB–ZSM; GBOL
Taxon list of Nemathelminthes from Germany compiled in the context of the GBOL project TaxRef_GBOL_Nemathelminthes_DE Nemathelminthes Germany SMNS; GBOL
Taxon list of Nemertini from Germany compiled in the context of the GBOL project TaxRef_GBOL_Nemertini_DE Nemertini Germany SNSB–ZSM; GBOL
Taxon list of Opiliones from Germany compiled in the context of the GBOL project TaxRef_GBOL_Opiliones_DE Opiliones Germany 54 - ; + - ZFMK; GBOL Blick & Komposch (2004); Schönhofer & Holle (2007); Schönhofer & Hillen (2008)
Taxon list of Oribatida from Germany compiled in the context of the GBOL project TaxRef_GBOL_Oribatida_DE Oribatida Germany 594 - ; + - Dr. Ulrich Burkhardt SGN; GBOL Höfer & Horak (2012)
Taxon list of Ostracoda from Germany compiled in the context of the GBOL project TaxRef_GBOL_Ostracoda_DE Ostracoda Germany 309 - ; + 1 Dr. Finn Viehberg Uni Köln; GBOL Kempf (1980, 1986, 1995, 1997)
Taxon list of Pauropoda from Germany compiled in the context of the GBOL project TaxRef_GBOL_Pauropoda_DE (1137) Pauropoda Germany 32 - ; + 1 Dr. Jörg Spelda SNSB–ZSM; GBOL
Taxon list of Plathelminthes from Germany compiled in the context of the GBOL project TaxRef_GBOL_Plathelminthes_DE Plathelminthes Germany 943 - ; + - SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Porifera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Porifera_DE Porifera Germany 8 - ; + - SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Pseudoscorpiones from Germany compiled in the context of the GBOL project TaxRef_GBOL_Pseudoscorpiones_DE Pseudoscorpiones Germany 50 - ; + - Björn Rulik ZFMK; GBOL Blick et al. (2004); Muster et al. (2008)
Taxon list of Subterrane Fauna from Germany compiled in the context of the GBOL project TaxRef_GBOL_Subterra_DE Subterrane Fauna Germany 361 - ; + 1 Dr. Alexander Weigand BiK-F; GBOL de Jong (2012); Weber (2012, 2013); Zaenker (2008)
Taxon list of Symphyla from Germany compiled in the context of the GBOL project TaxRef_GBOL_Symphyla_DE Symphyla Germany 20 - ; + 1 Dr. Jörg Spelda SNSB–ZSM; GBOL
Taxon list of Tardigrada from Germany compiled in the context of the GBOL project TaxRef_GBOL_Tardigrada_DE Tardigrada Germany 61 - ; + - ZFMK; GBOL Degma & Guidetti (2007); Degma et al. (2009-2013); Guidetti & Bertolani (2005)

DTN taxon lists - Insecta

List title List code Taxonomic or biotic group Region Taxon names below genus level (number) Synonyms (number); Higher classification above subgenus/ genus level (+/-) Vernacular names - DE (number) List curator(s) Organisation(s) and /or project(s) supporting curation activities Publications
Taxon list of Auchenorrhyncha from Germany compiled in the context of the GBOL Project TaxRef_GBOL_Auchenorrhyncha_DE Auchenorrhyncha Germany 626 - ; + 623 Björn Rulik ZFMK; GBOL Nickel & Remane (2002, 2003), Holzinger et al. (2003), Nickel (2010)
Taxon list of Coleoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Coleoptera_DE (855) Coleoptera Germany 6.723 - ; + - Dr. Dirk Ahrens ZFMK; GBOL Köhler & Klausnitzer (1998)
Taxon list of Collembola from Germany compiled in the context of the GBOL project TaxRef_GBOL_Collembola_DE Collembola Germany 493 - ; + - Dr. Ulrich Burkhardt SGN; GBOL Schulz et al. (2003); Burkhardt (2012)
Taxon list of Dermaptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Dermaptera_DE Dermaptera Germany 8 - ; + - Prof. Dr. Horst Bohn SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Dictyoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Dictyoptera_DE Dictyoptera Germany 14 - ; + - Prof. Dr. Horst Bohn SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Diplura from Germany compiled in the context of the GBOL project TaxRef_GBOL_Diplura_DE Diplura Germany 17 - ; - - Dr. Jörg Spelda SNSB–ZSM; GBOL
Taxon list of Diptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Diptera_DE Diptera Germany 9.436 - ; + - Björn Rulik ZFMK; GBOL Schumann et al. (1999); Schumann (2003, 2005, 2010) (bisher Nematocera und Brachycera, Rest folgt noch)
Taxon list of Ephemeroptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Ephemeroptera_DE Ephemeroptera Germany 116 - ; + - SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Gnathifera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Gnathifera_DE Gnathifera Germany SNSB–ZSM; GBOL
Taxon list of Heteroptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Heteroptera_DE Heteroptera Germany 893 - ; + - Dr. Carsten Morkel GBOL Aukema & Rieger (1995, 1996, 1999, 2001, 2006)
Taxon list of Hymenoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Hymenoptera_DE Hymenoptera Germany 9.638 - ; + 1 Dr. Stefan Schmidt SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Lepidoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Lepidoptera_DE Lepidoptera Germany 3.758 - ; + 1884 Dr. Axel Hausmann, Dr. Andreas Segerer SNSB–ZSM; GBOL Segerer unpublished Central Lepidopteran database
Taxon list of Mecoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Mecoptera_DE Mecoptera Germany 9 - ; + - Thorsten Klug GBOL Saure (2003c)
Taxon list of Megaloptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Megaloptera_DE Megaloptera Germany 4 - ; + 3 ZFMK; GBOL Saure (2003b); Kleinsteuber & Röhricht (2011)
Taxon list of Microcoryphia (Archaeognatha) from Germany compiled in the context of the GBOL project TaxRef_GBOL_Microcoryphia_DE Microcoryphia (Archaeognatha) Germany 14 - ; + - Dr. Jörg Spelda SNSB–ZSM; GBOL
Taxon list of Neuroptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Neuroptera_DE Neuroptera Germany 101 - ; + 45 ZFMK; GBOL Saure (2003d); Kleinsteuber & Röhricht (2011)
Taxon list of Odonata from Germany compiled in the context of the GBOL project TaxRef_GBOL_Odonata_DE Odonata Germany 80 - ; + - SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Orthoptera (Grashoppers) from Germany compiled at the SNSB TaxRef_SNSB_Orthoptera_DE Orthoptera (Grashoppers) Germany 90 - ; + (nicht zugeordnet) - Dr. Sigfrid Ingrisch, Harald Schott ZFMK, IVL, SNSB; IBF
Taxon list of Phthiraptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Phthiraptera_DE Phthiraptera Germany 411 - ; + 3 ZFMK; GBOL Mey (2003, 2011)
Taxon list of Plecoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Plecoptera_DE Plecoptera Germany 123 - ; + - SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Protura from Germany compiled in the context of the GBOL project TaxRef_GBOL_Protura_DE Protura Germany 46 - ; + - Dr. Jörg Spelda SNSB–ZSM; GBOL
Taxon list of Pscoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Psocoptera_DE Psocoptera Germany 98 - ; + - ZFMK; GBOL Lienhard & Smithers (2002); Lienhard (2003, 2004, 2005, 2006, 2008, 2009, 2011, 2012)
Taxon list of Raphidioptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Raphidioptera_DE Raphidioptera Germany 10 - ; + 10 ZFMK; GBOL Saure (2003a); Röhricht & Kleinsteuber (2011)
Taxon list of Siphonaptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Siphonaptera_DE Siphonaptera Germany 72 - ; + 22 ZFMK; GBOL Kutzscher & Striese (2003); Schumann (2011)
Taxon list of Sternorrhyncha from Germany compiled in the context of the GBOL project TaxRef_GBOL_Sternorrhyncha_DE Sternorrhyncha Germany 1.006 - ; + 46 ZFMK; GBOL Burckhardt & Lauterer (2003); Bährmann (2003); Thieme & Eggers-Schuhmacher (2003); Schmutterer (2003); Bährmann (2011); Schmutterer (2011); Thieme & Müller (2011); Burckhardt & Klausnitzer (2011)
Taxon list of Strepsiptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Strepsiptera_DE Strepsiptera Germany 15 - ; + - ZFMK; GBOL Pohl & Oehlke (2003)
Taxon list of Thysanoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Thysanoptera_DE Thysanoptera Germany 231 - ; + 26 ZFMK; GBOL Schliephake (2001); Vierbergen (2004a,b); Moritz (2011)
Taxon list of Trichoptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Trichoptera_DE Trichoptera Germany 323 - ; + - SNSB–ZSM; GBOL Fauna Europaea
Taxon list of Zoraptera from Germany compiled in the context of the GBOL project TaxRef_GBOL_Zoraptera_DE Zoraptera Germany ZFMK; GBOL
Taxon list of Zygentoma from Germany compiled in the context of the GBOL project TaxRef_GBOL_Zygentoma_DE Zygentoma Germany 5 - ; + - Dr. Jörg Spelda SNSB–ZSM; GBOL

DTN taxon lists - Vertebrata

List title List code Taxonomic or biotic group Region Taxon names below genus level (number) Synonyms (number); Higher classification above subgenus/ genus level (+/-) Vernacular names - DE (number) List curator(s) Organisation(s) and /or project(s) supporting curation activities Publications
Taxon list of Amphibia from Germany compiled in the context of the GBOL project TaxRef_GBOL_Amphibia_DE Amphibia Germany 21 - ; + - Dr. Dennis Rödder ZFMK; GBOL Uetz (2012); Frost (2011)
Taxon list of Aves from Germany compiled in the context of the GBOL project TaxRef_GBOL_Aves_DE Aves Germany 519 - ; + 621 Dr. Renate van den Elzen, Dr. Till Töpfer ZFMK; GBOL Barthel & Helbig (2005)
Taxon list of Mammalia from Germany compiled in the context of the GBOL project TaxRef_GBOL_Mammalia_DE Mammalia Germany 107 - ; + - Dr. Rainer Hutterer ZFMK; GBOL Wilson & Reeder (2005)
Taxon list of Pisces from West Palaearctic compiled in the context of the FREDIE project TaxRef_FREDIE_Pisces-fw_Palaearctic Pisces (freshwater) West Palaearctic (Westpalaearktik) 1.049 - ; + - Dr. Matthias Geiger ZFMK; FREDIE Nicolas Bailley - Aquatic Biodiversity Informatics Office, The WorldFish Center and the FishBase Information Research Group, Inc., Los Baños, 4031 Laguna, Philippines. E-mail: n.bailly@cgiar.org
Taxon list of Pisces and Cyclostoma from Germany compiled in the context of the GBOL project TaxRef_GBOL_Pisces_DE Pisces et Cyclostomata Germany 118 - ; + - Dr. Matthias Geiger ZFMK; GBOL Kottelat & Freyhof (2007)
Taxon list of Reptilia from Germany compiled in the context of the GBOL project TaxRef_GBOL_Reptilia_DE Reptilia Germany 16 - ; + - Dr. Dennis Rödder ZFMK; GBOL Uetz (2012); Frost (2011)

DTN taxon lists - Fungi and Lichens, Fungal-like organisms

List title List code Taxonomic or biotic group Region Taxon names below genus level (number) Synonyms (number); Higher classification above subgenus/ genus level (+/-) Vernacular names - DE (number) List curator(s) Organisation(s) and /or project(s) supporting curation activities Publications
Taxon list of fungi and fungal-like organisms from Germany compiled by the DGfM TaxRef_DGfM_Fungi_DE Fungi (including lichens, downy mildews and myxomycetes) Germany 27.612 11.161; + 4.090 Frank Dämmrich DGfM Index Fungorum online; Kirk et al. (2008); MycoBank online
Taxon list of Puccinales from Germany compiled in the context of the GBOL project TaxRef_GBOL_Pucciniales_DE Pucciniales Germany Dr. Markus Scholler SMNK; GBOL Kirk et al. (2008); Scholler et al. (2011)
Taxon list of lichenicolous fungi from Germany compiled in the context of the LIAS project TaxRef_LIAS_LichFungi_DE Lichen-associated fungi Germany 826 4 Wolfgang von Brackel, Dr. Dagmar Triebel, Dr. Konstanze Bensch SNSB–BSM; LIAS Wirth et al. 2011; LIASnames
Taxon list of lichenicolous fungi from United Kingdom compiled in the context of the LIAS project TaxRef_LIAS_LichFungi_UK Lichen-associated fungi United Kingdom 515 3 Dr. Dagmar Triebel SNSB–BSM; LIAS British Lichen Society online
Taxon list of lichens from Germany compiled in the context of the LIAS project TaxRef_LIAS_Lichens_DE Lichens Germany 5.279 220 Wolfgang von Brackel, Dr. Peter Scholz, Dr. Dagmar Triebel, Dr. Konstanze Bensch SNSB–BSM; LIAS Wirth et al. 2011; LIASnames
Taxon list of lichens from United Kingdom compiled in the context of the LIAS project TaxRef_LIAS_Lichens_UK Lichens United Kingdom 1.889 172 Dr. Dagmar Triebel, Dr. Konstanze Bensch SNSB–BSM; LIAS British Lichen Society online
Taxon list of Erysiphales from Germany compiled in the context of the LIAS project TaxRef_LIAS_Erys_DE Powdery mildews Germany 122 - Dr. Konstanze Bensch SNSB–BSM; LIAS Brandenburger & Hagedorn 2006; LIASnames
Taxon list of Myxomycetes from Germany compiled at the SNSB TaxRef_SNSB_Myxomycetes_DE Slime moulds Germany 401 - Andreas Kuhnt SNSB–BSM; GBIF.DE Schnittler et al. 2011; Eumycetozoa.com

DTN taxon lists - Plants

List title List code Taxonomic or biotic group Region Taxon names below genus level (number) Synonyms (number); Higher classification above subgenus/ genus level (+/-) Vernacular names - DE (number) List curator(s) Organisation(s) and /or project(s) supporting curation activities Publications
Taxon list of vascular plants from Bavaria, Germany compiled in the context of the BFL project TaxRef_BFL_VPlants Vascular plants Bavaria 11.257 (6.867 accepted) 4.407; + 6.264 Wolfgang Ahlmer SNSB–BSM; BFL Lippert & Meierott (2014); Scheuerer & Ahlmer (2003); Wisskirchen & Haeupler (1998)
Taxon list of hornworts from Germany compiled in the context of the GBOL project TaxRef_GBOL_Hornworts_DE Hornworts Germany 6 - ; + 6 Dr. Martin Nebel SMNS; GBOL Koperski et al. (2000); Meinunger & Schröder (2007a)
Taxon list of mosses from Germany compiled in the context of the GBOL project TaxRef_GBOL_Liverworts_DE Liverworts Germany 274 - ; + 266 Dr. Martin Nebel SMNS; GBOL Koperski et al. (2000); Meinunger & Schröder (2007a); Crandall-Stotler et al. (2009)
Taxon list of mosses from Germany compiled in the context of the GBOL project TaxRef_GBOL_Mosses_DE (849) Mosses Germany 1.089 176; + 882 Dr. Martin Nebel SMNS; GBOL Koperski et al. (2000); Meinunger & Schröder (2007a+b+c); Hill et al. (2006); Goffinet et al. (2009)
Taxon list of Pteridophyta from Germany compiled in the context of the GBOL project TaxRef_GBOL_Pteridophyta_DE Pteridophytes (= horsetails, ferns, club mosses, quillworts) Germany 92 - ; + 91 Dr. Martin Nebel SMNS; GBOL Korneck et al. (1996)
Taxon list of Spermatophyta from Germany compiled in the context of the GBOL project TaxRef_GBOL_Spermatophyta_DE Spermatophyta - for GBOL selected taxa! Germany 1.385 18; + 22 Dr. Ralf Hand BONN (Nees); GBOL

DTN taxon lists - Fossils

List title List code Taxonomic or biotic group Region Taxon names below genus level (number) Synonyms (number); Higher classification above subgenus/ genus level (+/-) Vernacular names - DE (number) List curator(s) Organisation(s) and /or project(s) supporting curation activities Publications
Taxon list of Jurassic Pisces of the Tethys Palaeo-Environment compiled in the context of the SNSBnames Project TaxRef_SNSB-JME_Pisces_Jurassic_Tethys Pisces Jurassic - Tethys 180 67 ; + - Martin Ebert SNSB-JME

DTN taxon lists - TaxaVaria

List title List code Taxonomic or biotic group Region Taxon names below genus level (number) Synonyms (number); Higher classification above subgenus/ genus level (+/-) Vernacular names - DE (number) List curator(s) Organisation(s) and /or project(s) supporting curation activities Publications
Taxon list of animals with German names (worldwide) compiled at the SMNS TaxRef_SMNS_GermanNames_World Animals with German names World 12.596 - ; + 12.590 Dr. Joachim Holstein, Dr. Juan Carlos Monje SMNS; GFBio Fotolulu (2015)
Taxon list of plant galls from Germany compiled at the UBT TaxRef_UBT_Galls_DE Plant gall inducing organisms Germany 493 - ; + 20 Prof. Dr. Gerhard Rambold, Alexander Guhr UBT; IBF Buhr (2005 onwards); Redfern & Shirley (2012)


  • Further name projects and taxon lists designed for specific research projects and institutional collection purposes are stored in the DWB environments e.g. of SMNK, SNSB, UBT, ZFMK.
  • There are some DTN taxon lists with restricted access rights for GBOL. They are stored in the ZFMK installation of the DWB.

Internal Additions