Difference between revisions of "MycoBank LIAS work meeting"
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| − | + | = Location: [http://www.botanischestaatssammlung.de/ Botanische Staatssammlung München] with [http://www.snsb.info SNSB IT Center] = | |
[https://www.google.de/maps/place/Botanische+Staatssammlung/@48.16427,11.50135,15z/data=!4m2!3m1!1s0x0:0xb57aa0cee84c55ea Location in Google Maps] | [https://www.google.de/maps/place/Botanische+Staatssammlung/@48.16427,11.50135,15z/data=!4m2!3m1!1s0x0:0xb57aa0cee84c55ea Location in Google Maps] | ||
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Phone Numbers: +49 089/17861 - 252 (Triebel), - 265 (BSM office), - 303 (Bensch) | Phone Numbers: +49 089/17861 - 252 (Triebel), - 265 (BSM office), - 303 (Bensch) | ||
| − | + | = Participants = | |
Prof. Dr. Pedro Crous, Dr. Konstanze Bensch, Dr. Vincent Robert [http://www.cbs.knaw.nl/ CBS-KNAW Fungal Biodiversity Centre] and Dr. Dagmar Triebel, Dr. Stefan Seifert, Dr. Markus Weiss | Prof. Dr. Pedro Crous, Dr. Konstanze Bensch, Dr. Vincent Robert [http://www.cbs.knaw.nl/ CBS-KNAW Fungal Biodiversity Centre] and Dr. Dagmar Triebel, Dr. Stefan Seifert, Dr. Markus Weiss | ||
| + | |||
| + | =Agenda= | ||
==Monday, Nov. 14th, 2016== | ==Monday, Nov. 14th, 2016== | ||
| − | 12:30-13:00 ''lunch'' | + | 12:30-13:00 ''lunch''; Frau Prof. Dr. Renner, Director of the Botanische Staatssammlung München, welcomes the guests |
| − | 13:00-13:30 Introduction to | + | 13:00-13:30 Introduction to [https://www.bio-aware.com/Defaultinfo.aspx?Page=BioloMICSNet BioloMICS] – Software and databases (Vincent Robert) |
| − | 13:30-14:00 Introduction to [http://diversityworkbench.net Diversity Workbench] | + | 13:30-14:00 Introduction to [http://diversityworkbench.net Diversity Workbench] – Software and databases (Dagmar Triebel) |
14:00-14:30 [http://www.mycobank.org/ MycoBank] – Content and services (Vincent Robert or Konstanze Bensch?, to be confirmed) | 14:00-14:30 [http://www.mycobank.org/ MycoBank] – Content and services (Vincent Robert or Konstanze Bensch?, to be confirmed) | ||
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15:00-15:30 ''coffee break and discussion'' | 15:00-15:30 ''coffee break and discussion'' | ||
| − | 15:30-16:00 [http://liaslight.lias.net/ LIAS light] | + | 15:30-16:00 [http://liaslight.lias.net/ LIAS light] – possible candidate to be addressed by MycoBank, e. g. with deep links?, and vice versa |
16:00-16:30 Partnership / links between both cooperating institutions: CBS and BSM | 16:00-16:30 Partnership / links between both cooperating institutions: CBS and BSM | ||
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16:30-17:30 Standardized author abbreviations, citation etc., services agreed with botanical - mycological authorities | 16:30-17:30 Standardized author abbreviations, citation etc., services agreed with botanical - mycological authorities | ||
| − | Author IDs / | + | Author IDs /Researcher IDs/ORCID, several kind of abbreviations |
ca. 18:30'' dinner'' | ca. 18:30'' dinner'' | ||
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==Tuesday, Nov. 15th, 2016== | ==Tuesday, Nov. 15th, 2016== | ||
| − | 09:00-09:30 Fungal Types in the herbarium in Munich (M); DiversityCollection, link by collection object accession number? (Konstanze Bensch) | + | 09:00-09:30 Fungal Types in the herbarium in Munich (M); DiversityCollection, link by collection object accession number?; see also [http://www.botanischestaatssammlung.de/projects/coll_online.html Collections online] (Konstanze Bensch) |
| − | + | Not all, but a great number of data records of selected fungal types (c. 7.500 lichen types, 2.000 fungal types are published via [http://biocase.snsb.info/wrapper/index.cgi BioCASe Provider software access points] – soon resolved through CETAF stable identifier system –; in parallel they are accessible via GBIF / via JSTOR Plant Science, basionym or better accession number available for link with the taxonomic names in MycoBank. We estimate 20.000–30.0000 fungal/ lichen types in M; the majority is not digitalised. | |
''coffee break'' | ''coffee break'' | ||
| − | 10:00-12:00 Web services for data exchange (realised or in | + | 10:00-12:00 Web services for data exchange (realised or in planning stage) |
[http://services.snsb.info/DTNtaxonlists/rest/v0.1/static/api-doc.html Regionalised and Domain-specific Taxon Lists] (Stefan Seifert) | [http://services.snsb.info/DTNtaxonlists/rest/v0.1/static/api-doc.html Regionalised and Domain-specific Taxon Lists] (Stefan Seifert) | ||
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[http://indexs.botanischestaatssammlung.de/ IndExs – Index of Exsiccatae] – content has possible relevance for MycoBank (Konstanze Bensch) | [http://indexs.botanischestaatssammlung.de/ IndExs – Index of Exsiccatae] – content has possible relevance for MycoBank (Konstanze Bensch) | ||
| − | DiversityCollection and web services MycoBank ( | + | DiversityCollection and web services MycoBank (Markus Weiss) |
LIAS names | LIAS names | ||
Latest revision as of 14:23, 11 November 2016
Location: Botanische Staatssammlung München with SNSB IT Center
Menzinger Str. 67, room no. 232, second floor
Phone Numbers: +49 089/17861 - 252 (Triebel), - 265 (BSM office), - 303 (Bensch)
Participants
Prof. Dr. Pedro Crous, Dr. Konstanze Bensch, Dr. Vincent Robert CBS-KNAW Fungal Biodiversity Centre and Dr. Dagmar Triebel, Dr. Stefan Seifert, Dr. Markus Weiss
Agenda
Monday, Nov. 14th, 2016
12:30-13:00 lunch; Frau Prof. Dr. Renner, Director of the Botanische Staatssammlung München, welcomes the guests
13:00-13:30 Introduction to BioloMICS – Software and databases (Vincent Robert)
13:30-14:00 Introduction to Diversity Workbench – Software and databases (Dagmar Triebel)
14:00-14:30 MycoBank – Content and services (Vincent Robert or Konstanze Bensch?, to be confirmed)
14:30-15:00 LIAS names – DiversityTaxonNames Content and services (Dagmar Triebel)
15:00-15:30 coffee break and discussion
15:30-16:00 LIAS light – possible candidate to be addressed by MycoBank, e. g. with deep links?, and vice versa
16:00-16:30 Partnership / links between both cooperating institutions: CBS and BSM
16:30-17:30 Standardized author abbreviations, citation etc., services agreed with botanical - mycological authorities
Author IDs /Researcher IDs/ORCID, several kind of abbreviations
ca. 18:30 dinner
Tuesday, Nov. 15th, 2016
09:00-09:30 Fungal Types in the herbarium in Munich (M); DiversityCollection, link by collection object accession number?; see also Collections online (Konstanze Bensch)
Not all, but a great number of data records of selected fungal types (c. 7.500 lichen types, 2.000 fungal types are published via BioCASe Provider software access points – soon resolved through CETAF stable identifier system –; in parallel they are accessible via GBIF / via JSTOR Plant Science, basionym or better accession number available for link with the taxonomic names in MycoBank. We estimate 20.000–30.0000 fungal/ lichen types in M; the majority is not digitalised.
coffee break
10:00-12:00 Web services for data exchange (realised or in planning stage)
Regionalised and Domain-specific Taxon Lists (Stefan Seifert)
IndExs – Index of Exsiccatae – content has possible relevance for MycoBank (Konstanze Bensch)
DiversityCollection and web services MycoBank (Markus Weiss)
LIAS names
lunch
13:00-15:00 Discussion groups on technical and scientific issues, final discussion