Difference between revisions of "IBF Diversity Workbench and Data Repository"
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| − | Diversity Workbench | + | The tasks of IBF Diversity Workbench and Data Repository working groups are twofold. First, they focus on the set up and enhancements comprise of the |
| + | The database framework Diversity Workbench with itsa currently 12 components. The framework is appropriate to store different kinds of data about interorganismal interactions and facilitates the management of institutional collections. The Diversity Workbench therefore represents a modularized system for multiple scientific purposes concerning analysis and management of biological data, e. g. collection data, observation data, descriptive and ecological data, taxonomy, taxon-mediated checklist data, ecological plots, images and literature data. It is also flexible enough to build the software backbone for long-term institutional data repositories for biological data. | ||
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| + | A large number of biodiversity research projects depend on field mapping and ecological data of high quality. Therefore it is necessary to link data sets gathered in the field to a verified backbone information from major biological, taxonomic or environmental data sources, e.g., lists of taxonomic names. Further on, there is a need to link additional information like Global Positioning System (GPS) coordinates and multimedia information, such as images or sound, at the time of data gathering. A seamless and transparent flow of data from the field to a central data storage system which may simultaneously be used by several participants is a necessity. “Seamless” in this sense means that data are available as stored datasets shortly after gathering; and “transparent” in the sense that every operation applied to data can be traced back ("data provenance"). For these core requirements, the Diversity Workbench includes a mobile application used to gather biological research data in the field that enables the dataflow to the data repository. The application DiversityMobile is currently designed as a mobile system for entering ecological and biological monitoring data already in the field. It is capable of accomplishing the core requirements mentioned above. For reasons of model consistency the mobile client uses a subset of the database model of the central database of the Diversity Workbench framework. See http://www.diversityworkbench.net and http://www.diversitymobile.net and the contribution “The Diversity Workbench Framework: Data retrieval with DiversityMobile and Dataflow from DiversityMobile to GBIF” for further information. | ||
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components DiversityCollection, DiversityTaxonNames, DiversityProjects, DiversityUsers, DiversityAgents, DiversitySamplingPlots with GIS functionality | components DiversityCollection, DiversityTaxonNames, DiversityProjects, DiversityUsers, DiversityAgents, DiversitySamplingPlots with GIS functionality | ||
storage of schemata? | storage of schemata? | ||
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| + | software repository **** | ||
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| + | The tasks of IBF Diversity Workbench and Data repository are institutional. | ||
administration of source code | administration of source code | ||
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data repository | data repository | ||
| − | + | project management administration after the end of the project keep running of Wiki software | |
Short description in English | Short description in English | ||
Revision as of 17:16, 3 November 2009
The tasks of IBF Diversity Workbench and Data Repository working groups are twofold. First, they focus on the set up and enhancements comprise of the The database framework Diversity Workbench with itsa currently 12 components. The framework is appropriate to store different kinds of data about interorganismal interactions and facilitates the management of institutional collections. The Diversity Workbench therefore represents a modularized system for multiple scientific purposes concerning analysis and management of biological data, e. g. collection data, observation data, descriptive and ecological data, taxonomy, taxon-mediated checklist data, ecological plots, images and literature data. It is also flexible enough to build the software backbone for long-term institutional data repositories for biological data.
A large number of biodiversity research projects depend on field mapping and ecological data of high quality. Therefore it is necessary to link data sets gathered in the field to a verified backbone information from major biological, taxonomic or environmental data sources, e.g., lists of taxonomic names. Further on, there is a need to link additional information like Global Positioning System (GPS) coordinates and multimedia information, such as images or sound, at the time of data gathering. A seamless and transparent flow of data from the field to a central data storage system which may simultaneously be used by several participants is a necessity. “Seamless” in this sense means that data are available as stored datasets shortly after gathering; and “transparent” in the sense that every operation applied to data can be traced back ("data provenance"). For these core requirements, the Diversity Workbench includes a mobile application used to gather biological research data in the field that enables the dataflow to the data repository. The application DiversityMobile is currently designed as a mobile system for entering ecological and biological monitoring data already in the field. It is capable of accomplishing the core requirements mentioned above. For reasons of model consistency the mobile client uses a subset of the database model of the central database of the Diversity Workbench framework. See http://www.diversityworkbench.net and http://www.diversitymobile.net and the contribution “The Diversity Workbench Framework: Data retrieval with DiversityMobile and Dataflow from DiversityMobile to GBIF” for further information.
components DiversityCollection, DiversityTaxonNames, DiversityProjects, DiversityUsers, DiversityAgents, DiversitySamplingPlots with GIS functionality storage of schemata?
software repository ****
The tasks of IBF Diversity Workbench and Data repository are institutional.
administration of source code
software repository / download
data repository
project management administration after the end of the project keep running of Wiki software
Short description in English
Scientists in this workpackage: D. Neubacher, W. Reichert, Dr. D. Triebel, Dr. M. Weiss