Difference between revisions of "Taxon lists for DiversityMobile"

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Revision as of 06:14, 20 June 2012

  • The IBF project/ DiversityMobile (smartphone app, app for Tablet PCs), the German Barcode of Life (=GBOL) project as well as many other biodiversity research projects depend on national/ regional species checklists/ taxon reference lists.
  • Species checklists/ taxon reference lists are essential as underlying standard lists (backbones) for web presentation services and (search) interfaces (e. g. as scroll lists). They are needed as dynamic service (database views and exports, web services) and as non-dynamic exports in various schemas and formats for external local database applications.
  • Such lists as managed by DiversityTaxonNames (=DTN) databases in a Diversity Workbench (= DWB) environment are called DTN taxon lists.
  • DTN taxon lists might be created (a) by direct import of taxon names from tab separated list files in a DWB environment, (b) by adding the relevant list information to nomenclators and species/ taxon databases already available as project in a DTN database of any DWB environment (e. g. GBIFnomenmyx, LIASnames, MELnames, MSWnames in the DWB environment of the SNSB, and UBTgallnames in the open TNT environment) and in future (c) by using the freely available (global) name thesauri e. g. via SOAP web services of Catalogue of Life (CoL), of Species File Software (SFS), IndexFungorum etc. to create a new DTN taxon list in a DTN database - [functionality "c" not yet implemented in DTN client!].
  • The existing DTN taxon lists in the context of IBF, LIAS and GBOL are built by either the method (a) or (b). They rely on expert taxonomists (= list curators) who collect information from published resources as national checklists and taxonomic thesauri as the "Global Species Databases" from the Catalogue of Life initiative (GSDs).
  • The content of DTN taxon lists has to be continuously updated. The list curators will be responsible for managing that data preferably by using the DTN .Net clients on their desktops.
  • Additions and corrections are welcome and might be sent to the respective list curators or to the persons responsible for the common taxonomy of major initiatives or projects like LIAS and GBOL.
  • To document the content of the lists currently used in the IBF, LIAS and GBOL context and enlarge the acceptance within the project communities they will be accessible for open and free download as csv, xls, xml files via the GBOL portal, the GBIF-D portal and the DiversityMobile Wiki.
  • The DTN taxon lists do not compete against commented reference checklists/ red lists etc., published e. g. by the Bundesamt für Naturschutz as regular citable and copyrighted publications. They are non-commented outputs of a relational database system.



DTN databases in the DWB virtual server environment "TNT"

There are DTN databases for each major organism group in the DWB virtual server environment "Taxon Names and Terms (=TNT)". Each database has name projects with DTN taxon lists. Expert taxonomists and list curators will have access on project level to edit names data. The DTN taxon lists are accessible for web applications, e. g. through the DWB web editor for GBOL.


DiversityTaxonNames_Animalia

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Insecta

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.

Project: IBFnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Vertebrata

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Fungi

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.

Project: LIASnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Myxomycetes

Project: GBIFnomenmyx with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Plants

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Galls

Project: UBTgallnames with DTN taxon lists (=TaxRefLists): see table below.

DTN taxon lists legend

Taxon list missing
Taxon list exist but import confirmation missing
imported, ready for checking
ready to use

DTN taxon lists - Animalia varia

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Arachnida ["Rest", exkl. Araneae, Pseudoscorpiones] Germany TaxRef_GBOL_Arachnida_DE
Pseudoscorpiones Germany TaxRef_GBOL_Pseudoscorpiones_DE Björn Rulik
Araneae Germany TaxRef_GBOL_Araneae_DE Dr. Hubert Höfer
Chilopoda Germany TaxRef_GBOL_Chilopoda_DE Dr. Thomas Wesener
Diplopoda Germany TaxRef_GBOL_Diplopoda_DE Dr. Thomas Wesener
Symphyla Germany TaxRef_GBOL_Symphyla_DE
Pauropoda Germany TaxRef_GBOL_Pauropoda_DE
Malacostraca Germany TaxRef_GBOL_Malacostraca_DE
Eumalacostraca Germany TaxRef_GBOL_Eumalacostraca_DE
Heterotardigrada Germany TaxRef_GBOL_Heterotardigrada_DE
             
             
             

DTN taxon lists - Insecta

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Orthoptera (Grashoppers) Germany 88 TaxRef_SNSB_Orthoptera_DE Dr. Sigfrid Ingrisch, Harald Schott
Collembola Germany TaxRef_GBOL_Collembola_DE
Neuroptera Germany TaxRef_GBOL_Neuroptera_DE
Coleoptera Germany TaxRef_GBOL_Coleoptera_DE Dr. Dirk Ahrens
Diptera Germany TaxRef_GBOL_Diptera_DE Björn Rulik
Ephemeroptera Germany TaxRef_GBOL_Ephemeroptera_DE
Auchenorrhyncha Germany TaxRef_GBOL_Auchenorrhyncha_DE Björn Rulik
Heteroptera Germany TaxRef_GBOL_Heteroptera_DE Dr. Carsten Morkel
Mecoptera Germany TaxRef_GBOL_Mecoptera_DE
Phthiraptera Germany TaxRef_GBOL_Phthiraptera_DE
Psocoptera Germany TaxRef_GBOL_Psocoptera_DE
Raphidioptera Germany TaxRef_GBOL_Raphidioptera_DE
Saltatoria Germany TaxRef_GBOL_Saltatoria_DE
Siphonaptera Germany TaxRef_GBOL_Siphonaptera_DE
Strepsiptera Germany TaxRef_GBOL_Strepsiptera_DE
Thysanoptera Germany TaxRef_GBOL_Thysanoptera_DE
Trichoptera Germany TaxRef_GBOL_Trichoptera_DE
Zoraptera Germany TaxRef_GBOL_Zoraptera_DE
             
             
             

DTN taxon lists - Vertebrata

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Amphibia Germany TaxRef_GBOL_Amphibia_DE Dr. Dennis Rödder
Reptilia Germany TaxRef_GBOL_Reptilia_DE Dr. Dennis Rödder
Aves Germany TaxRef_GBOL_Aves_DE Dr. Renate van den Elzen
Mammalia Germany TaxRef_GBOL_Mammalia_DE Dr. Rainer Hutterer
Pisces et Cyclostomata Germany TaxRef_GBOL_Pisces_DE Dr. Matthias Geiger
             
             
             

DTN taxon lists - Fungi and Lichens

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Powdery mildews Germany TaxRef_LIAS_Erys_DE K. Bensch
Lichens Germany TaxRef_LIAS_Lichens_DE W. von Brackel, ? P. Scholz, D. Triebel
Lichen-associated fungi Germany TaxRef_LIAS_LichFungi_DE W. von Brackel, D. Triebel
Lichens United Kingdom TaxRef_LIAS_Lichens_UK D. Triebel
Lichen-associated fungi United Kingdom TaxRef_LIAS_LichFungi_UK D. Triebel
Ascomycetes - higher classification - TaxRef_LIAS_Myconet T. H. Lumbsch, D. Triebel
             
             

DTN taxon lists - Myxomycetes

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Slime moulds Germany 380 TaxRef_SNSB_Myxomycetes_DE ? A. Kuhnt, ? M. Schnittler
             
             
             

DTN taxon lists - Plants

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Vascular plants Germany TaxRef_BfN_VPlants W. Ahlmer, S. Klotz
Pteridophytes (= horsetails, ferns, club mosses, quillworts) Germany TaxRef_GBOL_Pteridophyta_DE ? J. Heinrichs, ? M. Nebel
Liverworts Germany 291 TaxRef_GBOL_Liverworts_DE ? J. Heinrichs, ? M. Nebel
Hornworts Germany TaxRef_GBOL_Hornworts_DE ? J. Heinrichs, ? M. Nebel
             
             
             
             

DTN taxon lists - Plant galls

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Plant gall inducing organisms Germany c. ? TaxRef_UBT_Galls_DE G. Rambold, A. Guhr
             
             
             

DiversityMobile database in the DWB virtual server environment "TNT"

The database DiversityMobile with its current installations in the SNSB and TNT environments is designed for DiversityMobile applications on smartphones. It gives open and free read only access to all DTN taxon lists (=TaxRefLists) available in the TNT environment.


Additions

  • Further name projects and taxon lists designed for specific research projects and institutional collection purposes are stored in the DWB environments e.g. of SMNK, SNSB, UBT, ZFMK.
  • There are some DTNtaxonlists with restricted access rights for DiversityMobile applications. They are stored in the DiversityMobile installation of the SNSB.




Notes und Infos (später zu löschen):

German Barcode of Life (GBOL) information:

https://www.bolgermany.de/team/projekte

https://www.bolgermany.de/gbol/organismengruppen

https://www.bolgermany.de/gbol/organismengruppen/landpflanzen-pilze

GBOL Taxonkoordinator: Björn Rulik (b.rulik@zfmk.de) Barcoding Fauna Bavarica (BFB) information:

http://www.faunabavarica.de/taxa1-1


Ref. Myxomyxetes Deutschland:

Schnittler, M., Kummer, V., Kuhnt, A., Krieglsteiner, L., Flatau, L., Müller, H. & Täglich, U. 2011 Rote Liste und Gesamtartenliste der Schleimpilze (Myxomycetes) Deutschlands. Naturschutz und Biologische Vielfalt 70 (6): 125-234. p. 138 GBIF-D erwähnt

und http://www.gbif-mycology.de/DatabaseClients/GBIFmyxchecklist/


siehe http://www.diversitymobile.net/wiki/DiversityTaxonNames_Artenlisten