Difference between revisions of "Taxon lists for DiversityMobile"

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| Lichens || Germany || 2585 || TaxRef_LIAS_Lichens_DE
 
| Lichens || Germany || 2585 || TaxRef_LIAS_Lichens_DE
  || Wolfgang von Brackel, ? Dr. Peter Scholz, Dr. Dagmar Triebel || || [http://www.diversitymobile.net/wiki/images/0/0f/TaxRef_LIAS_Lichens_DE_2012-06-26.xls xls]
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  || Wolfgang von Brackel, Dr. Peter Scholz, Dr. Dagmar Triebel || || [http://www.diversitymobile.net/wiki/images/0/0f/TaxRef_LIAS_Lichens_DE_2012-06-26.xls xls]
 
|- style="background:#FF83FA;"
 
|- style="background:#FF83FA;"
 
| Lichens || United Kingdom || 1827 || TaxRef_LIAS_Lichens_UK || Dr. Dagmar Triebel|| || [http://www.diversitymobile.net/wiki/images/3/38/TaxRef_LIAS_Lichens_UK_2012-06-29.xls xls]
 
| Lichens || United Kingdom || 1827 || TaxRef_LIAS_Lichens_UK || Dr. Dagmar Triebel|| || [http://www.diversitymobile.net/wiki/images/3/38/TaxRef_LIAS_Lichens_UK_2012-06-29.xls xls]

Revision as of 10:11, 14 February 2013

Introduction: DTN taxon lists concept and architecture

  • The IBF project/ DiversityMobile (smartphone app, app for Tablet PCs), the German Barcode of Life (=GBOL) project as well as many other biodiversity research projects depend on national/ regional species checklists/ taxon reference lists.
  • Species checklists/ taxon reference lists are essential as underlying standard lists (backbones) for web presentation services and (search) interfaces (e. g. as scroll lists). They are needed as dynamic service (database views and exports, web services) and as non-dynamic exports in various schemas and formats for external local database applications.
  • Such lists as managed by DiversityTaxonNames (=DTN) databases in a Diversity Workbench (= DWB) environment are called DTN taxon lists.
  • DTN taxon lists might be created (a) by direct import of taxon names from tab separated list files in a DWB environment, (b) by adding the relevant list information to nomenclators and species/ taxon databases already available as project in a DTN database of any DWB environment (e. g. GBIFnomenmyx, LIASnames, MELnames, MSWnames in the DWB environment of the SNSB, and UBTgallnames in the open TNT environment) and in future (c) by using the freely available (global) name thesauri e. g. via SOAP web services of Catalogue of Life (CoL), of Species File Software (SFS), IndexFungorum etc. to create a new DTN taxon list in a DTN database - [functionality "c" not yet implemented in DTN client!].
  • The existing DTN taxon lists in the context of IBF, LIAS and GBOL are built by either the method (a) or (b). They rely on expert taxonomists (= list curators) who collect information from published resources as national checklists and taxonomic thesauri as the "Global Species Databases" from the Catalogue of Life initiative (GSDs).
  • The content of DTN taxon lists has to be continuously updated. The list curators will be responsible for managing that data preferably by using the DTN .Net clients on their desktops.
  • Additions and corrections are welcome and might be sent to the respective list curators or to the persons responsible for the common taxonomy of major initiatives or projects like LIAS and GBOL.


DTN taxon lists open and freely accessible

  • To document the content of the lists under creative common license which are currently used in the IBF, LIAS and GBOL context and enlarge the acceptance of those lists within the project communities they are managed by DTN installations in the DWB virtual server environment "Taxon Names and Term = TNT".
  • The DTN taxon lists do not compete against commented reference checklists/ red lists etc., published e. g. by the Bundesamt für Naturschutz as regular citable and copyrighted publications. They are non-commented outputs of a relational database system.

DTN databases in the DWB virtual server environment "TNT"

Concept:

  • There are DTN databases for each major organism group in the DWB virtual server environment "Taxon Names and Terms (=TNT)".
  • Each database has name projects with DTN taxon lists.
  • Expert taxonomists and list curators will have access on project level to edit names data.
  • The DTN taxon lists are accessible for web applications, e. g. through the DWB web editor for GBOL.


DiversityTaxonNames_Animalia [Attention!! includes all groups of Animalia exclusive Insecta and Vertebrata]

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Insecta

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.

Project: IBFnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Vertebrata

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Fungi

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.

Project: LIASnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Myxomycetes

Project: GBIFnomenmyx with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Plants

Project: GBOLnames with DTN taxon lists (=TaxRefLists): see table below.


DiversityTaxonNames_Galls

Project: UBTgallnames with DTN taxon lists (=TaxRefLists): see table below.

DTN taxon lists legend

Taxon list missing
Taxon list exist but import confirmation missing
ready for import
imported, ready for checking
ready to use

DTN taxon lists - Animalia varia

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Acoelomorpha Germany TaxRef_GBOL_Acoelomorpha_DE ZSM
Annelida s.l. Germany TaxRef_GBOL_Annelida_DE ZSM
Arachnida ["Rest", exkl. Araneae, Oribatida, Pseudoscorpiones] Germany TaxRef_GBOL_Arachnida_DE SMNK, SMNS, ZFMK
Araneae Germany TaxRef_GBOL_Araneae_DE Dr. Hubert Höfer
Bryozoa Germany TaxRef_GBOL_Bryozoa_DE ZSM
Chilopoda Germany TaxRef_GBOL_Chilopoda_DE Dr. Thomas Wesener
Cnidaria Germany TaxRef_GBOL_Cnidaria_DE ZSM
Crustacea Germany TaxRef_GBOL_Crustacea_DE ZFMK
Diplopoda Germany TaxRef_GBOL_Diplopoda_DE Dr. Thomas Wesener
Eumalacostraca Germany TaxRef_GBOL_Eumalacostraca_DE
Malacostraca Germany TaxRef_GBOL_Malacostraca_DE
Mollusca Germany TaxRef_GBOL_Mollusca_DE ZSM
Myriapoda Germany TaxRef_GBOL_Myriapoda_DE Dr. Thomas Wesener
Nemathelminthes Germany TaxRef_GBOL_Nemathelminthes_DE ZFMK
Nemertini Germany TaxRef_GBOL_Nemertini_DE ZSM
Oribatida Germany TaxRef_GBOL_Oribatida_DE Dr. Ulrich Burkhardt
Ostracoda Germany TaxRef_GBOL_Ostracoda_DE Dr. Finn Viehberg
Pauropoda Germany TaxRef_GBOL_Pauropoda_DE
Plathelminthes Germany TaxRef_GBOL_Plathelminthes_DE ZSM
Porifera Germany TaxRef_GBOL_Porifera_DE ZSM
Pseudoscorpiones Germany TaxRef_GBOL_Pseudoscorpiones_DE Björn Rulik
Symphyla Germany TaxRef_GBOL_Symphyla_DE
Tardigrada Germany TaxRef_GBOL_Tardigrada_DE ZFMK
             
             
             

DTN taxon lists - Insecta

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Archaeognatha Germany TaxRef_GBOL_Archaeognatha_DE ZSM
Auchenorrhyncha Germany TaxRef_GBOL_Auchenorrhyncha_DE Björn Rulik
Coleoptera Germany TaxRef_GBOL_Coleoptera_DE Dr. Dirk Ahrens
Collembola Germany TaxRef_GBOL_Collembola_DE Dr. Ulrich Burkhardt
Dermaptera Germany TaxRef_GBOL_Dermaptera_DE ZSM
Dictyoptera Germany TaxRef_GBOL_Dictyoptera_DE ZSM
Diptera Germany TaxRef_GBOL_Diptera_DE Björn Rulik
Entognatha Germany TaxRef_GBOL_Entognatha_DE ZSM
Ephemeroptera Germany TaxRef_GBOL_Ephemeroptera_DE ZSM
Gnathifera Germany TaxRef_GBOL_Gnathifera_DE ZSM
Heteroptera Germany TaxRef_GBOL_Heteroptera_DE Dr. Carsten Morkel
Hymenoptera Germany TaxRef_GBOL_Hymenoptera_DE ZSM
Lepidoptera Germany TaxRef_GBOL_Lepidoptera_DE ZSM
Mecoptera Germany TaxRef_GBOL_Mecoptera_DE Thorsten Klug
Megaloptera Germany TaxRef_GBOL_Megaloptera_DE ZFMK
Neuroptera Germany TaxRef_GBOL_Neuroptera_DE ZFMK
Odonata Germany TaxRef_GBOL_Odonata_DE ZSM
Orthoptera (Grashoppers) Germany 88 TaxRef_SNSB_Orthoptera_DE Dr. Sigfrid Ingrisch, Harald Schott xls
Phthiraptera Germany TaxRef_GBOL_Phthiraptera_DE ZFMK
Plecoptera Germany TaxRef_GBOL_Plecoptera_DE ZSM
Psocoptera Germany TaxRef_GBOL_Psocoptera_DE ZFMK
Raphidioptera Germany TaxRef_GBOL_Raphidioptera_DE ZFMK
Siphonaptera Germany TaxRef_GBOL_Siphonaptera_DE ZFMK
Sternorrhyncha Germany TaxRef_GBOL_Sternorrhyncha_DE ZFMK
Strepsiptera Germany TaxRef_GBOL_Strepsiptera_DE ZFMK
Thysanoptera Germany TaxRef_GBOL_Thysanoptera_DE ZFMK
Trichoptera Germany TaxRef_GBOL_Trichoptera_DE ZSM
Zoraptera Germany TaxRef_GBOL_Zoraptera_DE ZFMK
Zygentoma Germany TaxRef_GBOL_Zygentoma_DE ZSM
             
             
             

DTN taxon lists - Vertebrata

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Amphibia Germany TaxRef_GBOL_Amphibia_DE Dr. Dennis Rödder
Aves Germany TaxRef_GBOL_Aves_DE Dr. Renate van den Elzen, Dr. Till Töpfer
Mammalia Germany TaxRef_GBOL_Mammalia_DE Dr. Rainer Hutterer
Pisces et Cyclostomata Germany TaxRef_GBOL_Pisces_DE Dr. Matthias Geiger
Reptilia Germany TaxRef_GBOL_Reptilia_DE Dr. Dennis Rödder
             
             
             

DTN taxon lists - Fungi and Lichens

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Lichen-associated fungi Germany 562 TaxRef_LIAS_LichFungi_DE Wolfgang von Brackel, Dr. Dagmar Triebel xls
Lichen-associated fungi United Kingdom 457 TaxRef_LIAS_LichFungi_UK Dr. Dagmar Triebel xls
Lichens Germany 2585 TaxRef_LIAS_Lichens_DE Wolfgang von Brackel, Dr. Peter Scholz, Dr. Dagmar Triebel xls
Lichens United Kingdom 1827 TaxRef_LIAS_Lichens_UK Dr. Dagmar Triebel xls
Powdery mildews Germany 133 TaxRef_LIAS_Erys_DE Dr. Konstanze Bensch xls
Pucciniales Germany TaxRef_GBOL_Pucciniales_DE Dr. Markus Scholler
             
             

DTN taxon lists - Myxomycetes

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Slime moulds Germany 430 TaxRef_SNSB_Myxomycetes_DE Andreas Kuhnt xls
             
             
             

DTN taxon lists - Plants

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Hornworts Germany TaxRef_GBOL_Hornworts_DE Dr. Martin Nebel
Liverworts Germany 291 TaxRef_GBOL_Liverworts_DE Dr. Martin Nebel
Mosses Germany TaxRef_GBOL_Mosses_DE Dr. Martin Nebel
Pteridophytes (= horsetails, ferns, club mosses, quillworts) Germany TaxRef_GBOL_Pteridophyta_DE Dr. Martin Nebel
Vascular plants Germany TaxRef_BfN_VPlants Wolfgang Ahlmer, Jürgen Klotz
             
             
             

DTN taxon lists - Plant galls

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Plant gall inducing organisms Germany c. ? TaxRef_UBT_Galls_DE Prof. Dr. Gerhard Rambold, Alexander Guhr
             
             
             

DiversityMobile database in the DWB virtual server environment "TNT"

The database DiversityMobile with its current installations in the SNSB and TNT environments is designed for DiversityMobile applications on smartphones. It gives open and free read only access to all DTN taxon lists (=TaxRefLists) available in the TNT environment.

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Arachnida ["Rest", exkl. Araneae, im Moment nur Pseudoscorpiones] Germany TaxRef_GBOL_Arachnida_DE Björn Rulik
Auchenorrhyncha Germany TaxRef_GBOL_Auchenorrhyncha_DE Björn Rulik
Galls Germany TaxRef_UBT_Galls_DE Prof. Dr. Gerhard Rambold, Alexander Guhr
Orthoptera (Grashoppers) Germany 88 TaxRef_SNSB_Orthoptera_DE Dr. Sigfrid Ingrisch, Harald Schott xls
Lichen-associated fungi Germany 562 TaxRef_LIAS_LichFungi_DE Wolfgang von Brackel, Dr. Dagmar Triebel xls
Lichens Germany 2585 TaxRef_LIAS_Lichens_DE Wolfgang von Brackel, Dr. Peter Scholz, Dr. Dagmar Triebel xls
Powdery mildews Germany 133 TaxRef_LIAS_Erys_DE Dr. Konstanze Bensch xls
             
             

DiversityMobile database in the DWB virtual server environment "SNSB"

Organisms Region Taxa List Curators Release date Downloads (csv, xls, xml)
Fungi Germany TaxRef_DGfM_Fungi
Lichen-associated fungi Germany 562 TaxRef_LIAS_LichFungi_DE Wolfgang von Brackel, Dr. Dagmar Triebel xls
Lichens Germany 2585 TaxRef_LIAS_Lichens_DE Wolfgang von Brackel, Dr. Peter Scholz, Dr. Dagmar Triebel xls
Powdery mildews Germany 133 TaxRef_LIAS_Erys_DE Dr. Konstanze Bensch xls
Vascular plants Germany TaxRef_BfN_VPlants Wolfgang Ahlmer, Jürgen Klotz
             
             
             

Additions

  • Further name projects and taxon lists designed for specific research projects and institutional collection purposes are stored in the DWB environments e.g. of SMNK, SNSB, UBT, ZFMK.
  • There are some DTNtaxonlists with restricted access rights for DiversityMobile applications. They are stored in the DiversityMobile installation of the SNSB.


Internal Additions